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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143911913_143915578_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143911913 - 143915578
Intron Length:
3666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTAACTTTACCC
Flanking Amino Acid:
LRVKGESQILRERCGILQNP
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
81.7
34.2
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
55.3
0.14
1.7
63.5
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027400
143911665 - 143936330
24666