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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143915656_143918290_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143915656 - 143918290
Intron Length:
2635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TTTTGTAAAACT
Flanking Amino Acid:
RRMYLSEILQASSTLTVVER
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
76.6
0.6
1
70.2
40
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
49.5
0.04
2.3
80.33
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029353
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027400
143911665 - 143936330
24666