Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143918643_143930618_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143918643 - 143930618

Intron Length:

11976

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

ACTATAACCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTACTATAACC

Flanking Amino Acid:

IIRIFDQMPVGSLKEVLKQL

Intron Amino Acid Position:

152

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.82

0.8

78.5

30.1

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

63.8

0.31

55.4

38.5

Minor 5ss

30.7

-2.2

2.5

31.6

35.9

Minor BPS

0.55

1.6

80.26

34.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029353

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027400

143911665 - 143936330

24666