Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143930864_143931341_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143930864 - 143931341

Intron Length:

478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

GTTTGTTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTTGTTTTTAAG

Flanking Amino Acid:

EKRLSSVEDEGNEWKTRYEM

Intron Amino Acid Position:

101

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.3

1.09

0.7

86.7

22.1

Major BPS

71.2

0.53

70.3

31.9

Major PPT

75.6

0.58

1.1

79.2

38.4

Minor 5ss

-2.1

3.1

39.9

46.1

Minor BPS

48.1

-0.2

1.9

59.36

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029353

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027400

143911665 - 143936330

24666