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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143942510_143945668_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143942510 - 143945668
Intron Length:
3159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TCTTTCTTAAAA
Flanking Amino Acid:
STETVKTVKYKYGDDAGHAT
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
72.6
0.51
1.1
75.5
32
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
75.9
0.81
1.3
80.08
35.8

Associated Gene:

Gene:
SPART
Ensembl Gene ID:
ENSAPLG00000018313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025179
143942323 - 143952606
10284