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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143945760_143945860_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143945760 - 143945860
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTGTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATATATTCAAAT
Flanking Amino Acid:
ALVVAASGVQGFSTVWQGLE
Intron Amino Acid Position:
523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
90.7
0.92
0.8
87.5
30
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
49.8
0.07
1.8
70.32
39.9

Associated Gene:

Gene:
SPART
Ensembl Gene ID:
ENSAPLG00000018313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025179
143942323 - 143952606
10284