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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143947198_143948011_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143947198 - 143948011
Intron Length:
814

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTTG
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TTTGCCTTGAAG
Flanking Amino Acid:
SEKVAHGILSGASWVSWGLI
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
63.4
43.3
Major BPS
70
0.5
1
67
39.8
Major PPT
75.7
0.58
1
76.1
32.9
Minor 5ss
39.3
-1.2
3.5
55.6
48.6
Minor BPS
65.8
0.35
1.7
71.8
41.2

Associated Gene:

Gene:
SPART
Ensembl Gene ID:
ENSAPLG00000018313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025179
143942323 - 143952606
10284