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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143950744_143951780_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143950744 - 143951780
Intron Length:
1037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAA
5'SS Class:
major
3'SS Sequence:
TTGTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AATCCTTTAATT
Flanking Amino Acid:
AQNRPPAFLQVCDWLYPLMS
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
71.3
34.5
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
81.2
0.7
0.8
74
36.7
Minor 5ss
35.3
-1.7
3.4
46.9
48.4
Minor BPS
73.5
0.82
1.1
81.18
34

Associated Gene:

Gene:
SPART
Ensembl Gene ID:
ENSAPLG00000018313
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025179
143942323 - 143952606
10284