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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144005330_144005669_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144005330 - 144005669
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
AAAATATTAACT
Flanking Amino Acid:
QAIKEKYKHSKYLQVSLLEP
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
83.3
0.75
0.8
74.7
39.3
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
56.8
0.29
1.6
70.75
39.2

Associated Gene:

Gene:
CCNA1
Ensembl Gene ID:
ENSAPLG00000009813
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010211
144000293 - 144005948
5656