Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14402147_14402574_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14402147 - 14402574

Intron Length:

428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTTCTGGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTGAG

U12 Branch Point Sequence:

ACCCACTGAGGT

Flanking Amino Acid:

TRSLGLACNEFTGQCHCMPG

Intron Amino Acid Position:

1094

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

48.9

-0

1.5

46.7

38.9

Major PPT

75.8

0.58

37.4

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

39.2

-0.7

1.9

49.68

43.4

Associated Gene:

Gene:

LAMB1

Ensembl Gene ID:

ENSAPLG00000010460

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045321

14383082 - 14466920

83839

ENSAPLT00000010969

14383082 - 14423131

40050