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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144023039_144024496_F

Intron Information:

Intron Rank:
144600
Intron Class:
major
Intron Phase:
Intron Coordinates:
144023039 - 144024496
Intron Length:
1458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
TCTGATGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GTAACCTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
79
0.72
1
69
38.9
Major PPT
76.6
0.6
1
72.8
41.9
Minor 5ss
34.9
-1.7
2.9
52.3
44.3
Minor BPS
61.4
0.21
1.4
60.99
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027907
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044205
144020661 - 144025600
4940