Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14402793_14403580_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14402793 - 14403580

Intron Length:

788

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTGAGTGGA

5'SS Class:

major

3'SS Sequence:

CCTCTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACACAC

U12 Branch Point Sequence:

TGTGCCACACAC

Flanking Amino Acid:

YRSALQQDCRKCVCNYLGTV

Intron Amino Acid Position:

1021

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

62.2

38.7

Major BPS

49.1

-0

0.9

56.3

29.4

Major PPT

85.3

0.79

0.7

79.9

25.5

Minor 5ss

27.9

-2.5

27.5

37.6

Minor BPS

40.9

-0.7

2.1

53.84

43.3

Associated Gene:

Gene:

LAMB1

Ensembl Gene ID:

ENSAPLG00000010460

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045321

14383082 - 14466920

83839

ENSAPLT00000010969

14383082 - 14423131

40050