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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144032932_144040321_F

Intron Information:

Intron Rank:
142653
Intron Class:
major
Intron Phase:
Intron Coordinates:
144032932 - 144040321
Intron Length:
7390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGAAAA
5'SS Class:
major
3'SS Sequence:
ATCTTGCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTAATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.4
31.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.5
0.51
1
65.7
39.6
Minor 5ss
34.6
-1.7
3
42.1
39.6
Minor BPS
54.1
0.21
1.6
69.85
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021626
144032544 - 144040981
8438