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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144039663_144040321_F

Intron Information:

Intron Rank:
142655
Intron Class:
major
Intron Phase:
Intron Coordinates:
144039663 - 144040321
Intron Length:
659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCAA
5'SS Class:
major
3'SS Sequence:
ATCTTGCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTAATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
58.8
41.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.5
0.51
1
65.7
39.6
Minor 5ss
29.1
-2.4
3.4
38.6
46.4
Minor BPS
54.1
0.21
1.6
69.85
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036628
144039433 - 144042547
3115