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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144040380_144040702_F

Intron Information:

Intron Rank:
142654
Intron Class:
major
Intron Phase:
Intron Coordinates:
144040380 - 144040702
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGGGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
67
0.38
1.2
61.8
48.3
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026889
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036628
144039433 - 144042547
3115
ENSAPLT00000021626
144032544 - 144040981
8438