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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14406613_14406887_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14406613 - 14406887
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCTTGCTCGATG
Flanking Amino Acid:
YDIVVRYEPQLPDQWEKAVI
Intron Amino Acid Position:
614

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
92.4
0.95
0.6
85.4
29.3
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
45.5
-0.5
2.1
49.92
44.9

Associated Gene:

Gene:
LAMB1
Ensembl Gene ID:
ENSAPLG00000010460
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045321
14383082 - 14466920
83839
ENSAPLT00000010969
14383082 - 14423131
40050