Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14407047_14409403_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14407047 - 14409403

Intron Length:

2357

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGAGTAGC

5'SS Class:

major

3'SS Sequence:

CCTCTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

TTGGTATTAAAA

Flanking Amino Acid:

YEAEEANLGPGVNIIERQST

Intron Amino Acid Position:

561

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.3

63.5

42.9

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

80.8

0.69

0.7

76.6

25.5

Minor 5ss

32.5

-2

2.7

41.4

38.2

Minor BPS

51.6

0.05

1.8

65.19

41.1

Associated Gene:

Gene:

LAMB1

Ensembl Gene ID:

ENSAPLG00000010460

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045321

14383082 - 14466920

83839

ENSAPLT00000010969

14383082 - 14423131

40050