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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144160234_144168467_F

Intron Information:

Intron Rank:
131448
Intron Class:
major
Intron Phase:
Intron Coordinates:
144160234 - 144168467
Intron Length:
8234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTCCAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTCCAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
82.2
0.72
0.9
82.8
32.6
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
46.1
-0.4
2.1
60.04
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020603
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034797
144159264 - 144168819
9556