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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144206654_144208438_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144206654 - 144208438
Intron Length:
1785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAATAAC
5'SS Class:
major
3'SS Sequence:
TTGTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
GGCTGATTAATT
Flanking Amino Acid:
GGKSADGETENFRPVCYEEP
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
77.5
30.5
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
86.2
0.81
0.8
80.9
31.3
Minor 5ss
37.1
-1.5
2.8
45.4
36.8
Minor BPS
49.2
0.02
2
66.54
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009523
144196745 - 144232359
35615