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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144217972_144231567_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
144217972 - 144231567
Intron Length:
13596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGAAGCTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.5
0.66
0.9
70.4
44.5
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
63.7
0.51
1.8
78.8
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009523
144196745 - 144232359
35615