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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144256739_144266344_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144256739 - 144266344
Intron Length:
9606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TATCACTGTATT
Flanking Amino Acid:
RTFSTLHVERWAFDVELLYI
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.5
32.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
84.5
0.78
0.8
81.9
34.4
Minor 5ss
42.3
-0.8
2.9
56.2
43.3
Minor BPS
47.2
-0.1
1.9
68.95
41.5

Associated Gene:

Gene:
ALG5
Ensembl Gene ID:
ENSAPLG00000009011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009395
144248915 - 144277248
28334