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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144266497_144269849_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144266497 - 144269849
Intron Length:
3353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCT
5'SS Class:
major
3'SS Sequence:
CATTTGTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
AGCCATCTAACT
Flanking Amino Acid:
AHLEKDSIAKRSYFRTLLMY
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
75.3
35
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
78
0.63
0.9
71.8
37.8
Minor 5ss
45.3
-0.5
2.4
60.2
44.2
Minor BPS
46.8
-0.1
1.8
62.59
40.9

Associated Gene:

Gene:
ALG5
Ensembl Gene ID:
ENSAPLG00000009011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009395
144248915 - 144277248
28334