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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144269910_144271248_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144269910 - 144271248
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
AATTCCTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATTCTTTAATT
Flanking Amino Acid:
EGLKNLQPWPNQMAISCGSR
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.1
76.5
34
Major BPS
80
0.75
1
78.6
31
Major PPT
68
0.41
1
62.3
38.8
Minor 5ss
36.8
-1.5
2.9
52.2
44.4
Minor BPS
81.1
1.05
1
87.51
31.3

Associated Gene:

Gene:
ALG5
Ensembl Gene ID:
ENSAPLG00000009011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009395
144248915 - 144277248
28334