About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144272455_144273723_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144272455 - 144273723
Intron Length:
1269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTATGTCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATG
Flanking Amino Acid:
DDGSKDQTTKVAMKYCKKYG
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
69.5
0.44
1
67.2
43.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
52
-0
2.1
66.64
41.8

Associated Gene:

Gene:
ALG5
Ensembl Gene ID:
ENSAPLG00000009011
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009395
144248915 - 144277248
28334