Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144274482_144275704_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

144274482 - 144275704

Intron Length:

1223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGT|GTAAGATTT

5'SS Class:

major

3'SS Sequence:

TTTTTTTGTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

AATCTACTAACT

Flanking Amino Acid:

VVPSYNEEDRLPLMMDEAMD

Intron Amino Acid Position:

195

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.1

74.5

36.6

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

85.9

0.81

0.8

81.2

36.5

Minor 5ss

45.9

-0.4

3.2

66.3

44.6

Minor BPS

49.2

0.02

1.9

71.37

38.5

Associated Gene:

Gene:

ALG5

Ensembl Gene ID:

ENSAPLG00000009011

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009395

144248915 - 144277248

28334