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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144282949_144283035_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144282949 - 144283035
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
CGTTTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GCTGTTTTACTT
Flanking Amino Acid:
ASQFIADVIENSQIIAKEDL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
73.3
34.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.8
0.67
0.8
78.1
35
Minor 5ss
35.2
-1.7
3.1
44.8
36.8
Minor BPS
48.9
-0
1.7
62.87
42.6

Associated Gene:

Gene:
EXOSC8
Ensembl Gene ID:
ENSAPLG00000007895
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008238
144278949 - 144287290
8342