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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144283426_144284457_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144283426 - 144284457
Intron Length:
1032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTCACCT
Flanking Amino Acid:
VFALLAALKNVQLPSVTINE
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.5
0.69
0.8
77.4
31.2
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
56.2
0.27
1.8
77.81
39

Associated Gene:

Gene:
EXOSC8
Ensembl Gene ID:
ENSAPLG00000007895
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008238
144278949 - 144287290
8342