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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144284579_144286657_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
144284579 - 144286657
Intron Length:
2079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTCC
5'SS Class:
major
3'SS Sequence:
TTCCTTTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTTCCTTTCAAA
Flanking Amino Acid:
PVATSFAIFDDTLLIVDPTA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
36.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.6
0.42
1
71.6
31.9
Minor 5ss
42.7
-0.8
2.7
50.7
39.7
Minor BPS
57.6
0.23
1.9
73.99
37.5

Associated Gene:

Gene:
EXOSC8
Ensembl Gene ID:
ENSAPLG00000007895
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008238
144278949 - 144287290
8342