Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144298919_144299153_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

144298919 - 144299153

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATTATT

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTATTTTAATT

Flanking Amino Acid:

LPSSSGSSSSGNIFSSQQSS

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

92.8

22.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

90.2

0.9

0.7

88.4

28.7

Minor 5ss

41.7

-0.9

2.9

60.3

44.1

Minor BPS

76.1

0.9

1.1

87.86

31.1

Associated Gene:

Gene:

SUPT20H

Ensembl Gene ID:

ENSAPLG00000007566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022326

144287544 - 144321697

34154

ENSAPLT00000007873

144287544 - 144321697

34154

ENSAPLT00000031846

144287544 - 144321697

34154