Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144299260_144301276_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

144299260 - 144301276

Intron Length:

2017

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTGAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCTAGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

GTAGTGTTAATT

Flanking Amino Acid:

SHLSPGKEMEPESISGSVQS

Intron Amino Acid Position:

436

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.8

0.9

23.9

Major BPS

84.4

0.85

34.5

Major PPT

77.8

0.63

0.8

74.1

29.4

Minor 5ss

-1.1

2.9

49.4

41.3

Minor BPS

49.4

0.04

2.1

68.65

42.8

Associated Gene:

Gene:

SUPT20H

Ensembl Gene ID:

ENSAPLG00000007566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031846

144287544 - 144321697

34154

ENSAPLT00000022326

144287544 - 144321697

34154

ENSAPLT00000007873

144287544 - 144321697

34154