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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144306985_144307981_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144306985 - 144307981
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATCT
Flanking Amino Acid:
CYLTAPSEVDVEKYAKVEKS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.7
0.58
1
79.6
32.4
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
51.9
0.14
1.9
75.57
41.7

Associated Gene:

Gene:
SUPT20H
Ensembl Gene ID:
ENSAPLG00000007566
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022326
144287544 - 144321697
34154
ENSAPLT00000007873
144287544 - 144321697
34154
ENSAPLT00000031846
144287544 - 144321697
34154