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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144309643_144310427_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144309643 - 144310427
Intron Length:
785

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTATATTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTACATTTAATA
Flanking Amino Acid:
ITSDNHKWTQEDKLLLESQL
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79.3
31.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.4
0.5
1
66.4
43.8
Minor 5ss
28.1
-2.5
2.7
31.6
42.6
Minor BPS
62.7
0.4
1.4
70.78
35

Associated Gene:

Gene:
SUPT20H
Ensembl Gene ID:
ENSAPLG00000007566
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007873
144287544 - 144321697
34154
ENSAPLT00000031846
144287544 - 144321697
34154
ENSAPLT00000022326
144287544 - 144321697
34154