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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144310482_144310612_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144310482 - 144310612
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TCTTTCTCATCA
Flanking Amino Acid:
KHILLRPTMQTLICDVHSIT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
82.3
0.73
0.8
82.3
28.1
Minor 5ss
29.7
-2.3
3
40.4
45.3
Minor BPS
57.5
0.23
1.8
70.93
41.6

Associated Gene:

Gene:
SUPT20H
Ensembl Gene ID:
ENSAPLG00000007566
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031846
144287544 - 144321697
34154
ENSAPLT00000022326
144287544 - 144321697
34154
ENSAPLT00000007873
144287544 - 144321697
34154