Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144319381_144319477_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

144319381 - 144319477

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTAAGA

5'SS Class:

major

3'SS Sequence:

TTTTTAATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATT

Flanking Amino Acid:

PPKRKYLSSGRKSVFQKLYD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

64.5

41.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.6

0.87

0.8

86.6

31.3

Minor 5ss

31.5

-2.1

3.1

40.7

Minor BPS

84.9

1.17

0.8

94.97

24.6

Associated Gene:

Gene:

SUPT20H

Ensembl Gene ID:

ENSAPLG00000007566

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031846

144287544 - 144321697

34154

ENSAPLT00000022326

144287544 - 144321697

34154

ENSAPLT00000007873

144287544 - 144321697

34154