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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144319537_144320289_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144319537 - 144320289
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTTCT
Flanking Amino Acid:
ALELALDRAEYIIESARQRP
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
SUPT20H
Ensembl Gene ID:
ENSAPLG00000007566
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007873
144287544 - 144321697
34154
ENSAPLT00000031846
144287544 - 144321697
34154