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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144320326_144321599_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144320326 - 144321599
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ATAATTCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
CTGTTTATAATT
Flanking Amino Acid:
MQQALELALDR
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
77
0.61
0.9
70.4
40.3
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
56.4
0.28
1.6
71.52
40.5

Associated Gene:

Gene:
SUPT20H
Ensembl Gene ID:
ENSAPLG00000007566
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031846
144287544 - 144321697
34154
ENSAPLT00000007873
144287544 - 144321697
34154