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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144434221_144442614_F

Intron Information:

Intron Rank:
137271
Intron Class:
major
Intron Phase:
Intron Coordinates:
144434221 - 144442614
Intron Length:
8394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCTAT
U12 Branch Point Sequence:
TGTTGCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
53.6
0.09
1.4
52.4
44.8
Major PPT
79.6
0.67
0.8
73
37.3
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
46.3
-0.3
2.2
63.69
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023917
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019820
144433673 - 144443835
10163