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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144434221_144470170_F

Intron Information:

Intron Rank:
137270
Intron Class:
major
Intron Phase:
Intron Coordinates:
144434221 - 144470170
Intron Length:
35950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
CATTCTCTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
74.2
0.54
0.9
66.8
38.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
49.8
-0
2
64.81
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023917
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018091
144433673 - 144470359
36687