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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144595199_144596267_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144595199 - 144596267
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
RKVQANKRTQGGATRRRTRL
Intron Amino Acid Position:
829

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
79
0.72
1
78.4
31.2
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419
ENSAPLT00000043867
144595075 - 144628493
33419
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419