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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144596310_144600609_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144596310 - 144600609
Intron Length:
4300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TCTGACTGAAAT
Flanking Amino Acid:
DEEIKRLLQGEAPVRKVQAN
Intron Amino Acid Position:
802

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
70.7
41.1
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
83.6
0.76
0.8
76.8
37.4
Minor 5ss
33.6
-1.9
2.9
41
45.3
Minor BPS
50.1
0.08
1.9
71.24
45

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041558
144595075 - 144628493
33419