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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144598455_144600609_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144598455 - 144600609
Intron Length:
2155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATGCCTATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGTTTTTAATG
Flanking Amino Acid:
DEEIKRLLQGAGTEYTKVTK
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
70.7
41.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.4
0.44
0.9
63.3
37.5
Minor 5ss
33.6
-1.9
2.9
41
45.3
Minor BPS
71.2
0.53
1.3
70.08
38.2

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043867
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419