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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144600691_144601098_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144600691 - 144601098
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCCTATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATCAAT
U12 Branch Point Sequence:
TTTGCCATAACC
Flanking Amino Acid:
EEKIKKFLEEEVTKVTKFIE
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
60.3
0.26
1.2
68.8
34.5
Major PPT
73.4
0.53
1
71.3
39.4
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
71.5
0.65
1.7
83.65
35.8

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000043867
144595075 - 144628493
33419