About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144601177_144602768_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144601177 - 144602768
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTGTTTTAAAA
Flanking Amino Acid:
KKVTEERIIQGPEIKYTRIT
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.8
74
36.1
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
59.4
0.29
1.5
67.32
39.7

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043867
144595075 - 144628493
33419
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419