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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144602859_144603427_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144602859 - 144603427
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATG
5'SS Class:
major
3'SS Sequence:
AAAATCCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATCTTCAACT
Flanking Amino Acid:
GETITKVIHGEPVIKTYTKI
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.2
73.9
42.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
63.7
0.31
1
56
39.9
Minor 5ss
34.3
-1.8
2.9
42.3
44.5
Minor BPS
70.9
0.74
1.5
83.83
36.6

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419