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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144607737_144608274_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144607737 - 144608274
Intron Length:
538

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTT
5'SS Class:
major
3'SS Sequence:
TTTGTATTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTGTATTT
Flanking Amino Acid:
KKLIKYIQIKFVRDSTFKEI
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.9
34.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
82.7
0.74
0.8
78.1
35.3
Minor 5ss
45.1
-0.5
3.1
67.5
43.4
Minor BPS
50.7
0.1
2.2
78.46
39

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419
ENSAPLT00000043867
144595075 - 144628493
33419