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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144608343_144608731_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144608343 - 144608731
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCCGTATT
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TCTTACGTACCT
Flanking Amino Acid:
HVIDKLLYPADLPVGNDQLL
Intron Amino Acid Position:
633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1.3
82
38.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
87.8
0.85
0.6
88.4
21.1
Minor 5ss
36
-1.6
3.1
51.7
44.8
Minor BPS
48.8
-0
2.4
76.43
46

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043867
144595075 - 144628493
33419
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419