About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144613680_144614538_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144613680 - 144614538
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTGGCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATATAAATAACT
Flanking Amino Acid:
LLAPLNGAFSDDTLQMDQRL
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
77.3
37.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
67.4
0.39
1
60
40.9
Minor 5ss
32.4
-2
2.5
38
39.5
Minor BPS
49.9
0.07
2
75.37
40.1

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419
ENSAPLT00000043867
144595075 - 144628493
33419