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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144614674_144614840_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144614674 - 144614840
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
CCTTTATTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
LIDKVLIPDSAKQVIELGGA
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.2
79.5
35.6
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
85.9
0.81
0.8
80.5
30.3
Minor 5ss
34.2
-1.8
2.7
45.2
42.4
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043867
144595075 - 144628493
33419
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419