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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144615054_144615813_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
144615054 - 144615813
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
TTTTCCCTGAAG
Flanking Amino Acid:
RIMGDKVASEALVKFHILNT
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
85
26.2
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
75.3
0.57
1
76.2
26.4
Minor 5ss
41.1
-1
2.5
50.4
46.1
Minor BPS
60.9
0.2
1.9
73.04
39.2

Associated Gene:

Gene:
POSTN
Ensembl Gene ID:
ENSAPLG00000006311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041558
144595075 - 144628493
33419
ENSAPLT00000033428
144595075 - 144628493
33419
ENSAPLT00000047961
144595075 - 144628493
33419
ENSAPLT00000006687
144595075 - 144628493
33419
ENSAPLT00000044314
144595075 - 144628493
33419
ENSAPLT00000043867
144595075 - 144628493
33419