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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_144664828_144665988_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
144664828 - 144665988
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCTTCCTCATTT
Flanking Amino Acid:
EEGLTEENFKELKQDISSFR
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.1
0.66
0.8
77.2
30.3
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
61.8
0.45
1.8
79.99
42.5

Associated Gene:

Gene:
TRPC4
Ensembl Gene ID:
ENSAPLG00000005816
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006029
144664111 - 144821063
156953